Overview
| Uniprot ID | P12682 |
| Protein Name | High mobility group protein B1 |
| Gene Name | HMGB1 |
| Organism | Sus scrofa |
Kla Sites from experimental identification
| Position |
Flanking peptide |
| 114 |
SEYRPKIKGEHPGLS |
| 127 |
LSIGDVAKKLGEMWN |
| 154 |
KAAKLKEKYEKDIAA |
| 157 |
KLKEKYEKDIAAYRA |
| 177 |
AAKKGVVKAEKSKKK |
| 30 |
CREEHKKKHPDASVN |
| 43 |
VNFSEFSKKCSERWK |
| 50 |
KKCSERWKTMSAKEK |
| 59 |
MSAKEKGKFEDMAKA |
| 65 |
GKFEDMAKADKARYE |
| 82 |
MKTYIPPKGETKKKF |
| 88 |
PKGETKKKFKDPNAP |
| 90 |
GETKKKFKDPNAPKR |
Function
Multifunctional redox sensitive protein with various roles in different cellular compartments. In the nucleus is one of the major chromatin-associated non-histone proteins and acts as a DNA chaperone involved in replication, transcription, chromatin remodeling, V(D)J recombination, DNA repair and genome stability. Proposed to be an universal biosensor for nucleic acids. Promotes host inflammatory response to sterile and infectious signals and is involved in the coordination and integration of innate and adaptive immune responses. In the cytoplasm functions as a sensor and/or chaperone for immunogenic nucleic acids implicating the activation of TLR9-mediated immune responses, and mediates autophagy. Acts as a danger-associated molecular pattern (DAMP) molecule that amplifies immune responses during tissue injury. Released to the extracellular environment can bind DNA, nucleosomes, IL-1 beta, CXCL12, AGER isoform 2/sRAGE, lipopolysaccharide (LPS) and lipoteichoic acid (LTA), and activates cells through engagement of multiple surface receptors. In the extracellular compartment fully reduced HMGB1 (released by necrosis) acts as a chemokine, disulfide HMGB1 (actively secreted) as a cytokine, and sulfonyl HMGB1 (released from apoptotic cells) promotes immunological tolerance. Has proangiogenic activity. May be involved in platelet activation. Binds to phosphatidylserine and phosphatidylethanolamide. Bound to RAGE mediates signaling for neuronal outgrowth. May play a role in accumulation of expanded polyglutamine (polyQ) proteins (By similarity)
Protein Sequence
10
MGKGDPKKPR
20
GKMSSYAFFV
30
QTCREEHKKK
40
HPDASVNFSE
50
FSKKCSERWK
60
TMSAKEKGKF
70
EDMAKADKAR
80
YEREMKTYIP
90
PKGETKKKFK
100
DPNAPKRPPS
110
AFFLFCSEYR
120
PKIKGEHPGL
130
SIGDVAKKLG
140
EMWNNTAADD
150
KHPYEKKAAK
160
LKEKYEKDIA
170
AYRAKGKPDA
180
AKKGVVKAEK
190
SKKKKEEEED
200
EEDEEDEEEE
210
EDEEDEEEEE
DDDDE
Gene Ontology
| Classification |
GO ID |
Description |
| Cellular Component |
GO:0000785 |
chromatin |
| Cellular Component |
GO:0000793 |
condensed chromosome |
| Cellular Component |
GO:0005793 |
endoplasmic reticulum-Golgi intermediate compartment |
| Cellular Component |
GO:0005768 |
endosome |
| Cellular Component |
GO:0005576 |
extracellular region |
| Cellular Component |
GO:0005634 |
nucleus |
| Cellular Component |
GO:0005886 |
plasma membrane |
| Molecular Function |
GO:0000405 |
bubble DNA binding |
| Molecular Function |
GO:0000400 |
four-way junction DNA binding |
| Molecular Function |
GO:0044378 |
non-sequence-specific DNA binding, bending |
| Molecular Function |
GO:0097100 |
supercoiled DNA binding |
| Biological Process |
GO:0002250 |
adaptive immune response |
| Biological Process |
GO:0043277 |
apoptotic cell clearance |
| Biological Process |
GO:0006914 |
autophagy |
| Biological Process |
GO:0006935 |
chemotaxis |
| Biological Process |
GO:0006338 |
chromatin remodeling |
| Biological Process |
GO:0032392 |
DNA geometric change |
| Biological Process |
GO:0006310 |
DNA recombination |
| Biological Process |
GO:0006302 |
double-strand break repair |
| Biological Process |
GO:0006303 |
double-strand break repair via nonhomologous end joining |
| Biological Process |
GO:0006954 |
inflammatory response |
| Biological Process |
GO:0045087 |
innate immune response |
| Biological Process |
GO:0002755 |
MyD88-dependent toll-like receptor signaling pathway |
| Biological Process |
GO:0017055 |
negative regulation of RNA polymerase II transcription preinitiation complex assembly |
| Biological Process |
GO:0097350 |
neutrophil clearance |
| Biological Process |
GO:0006334 |
nucleosome assembly |
| Biological Process |
GO:1901224 |
positive regulation of non-canonical NF-kappaB signal transduction |
| Biological Process |
GO:0034165 |
positive regulation of toll-like receptor 9 signaling pathway |
| Biological Process |
GO:0002840 |
regulation of T cell mediated immune response to tumor cell |
| Biological Process |
GO:0034134 |
toll-like receptor 2 signaling pathway |
| Biological Process |
GO:0034142 |
toll-like receptor 4 signaling pathway |
Reference
[1] Fan S, Zhou R, Wen H, Ye H, Ma S et al.. Global profiling of protein lactylome in porcine granulosa cells.. J Ovarian Res 18(1):177. 2025 Aug 8. PMID: 40781717.