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Overview

Uniprot IDP12682
Protein NameHigh mobility group protein B1
Gene NameHMGB1
OrganismSus scrofa

Kla Sites from experimental identification

Position Flanking peptide
114 SEYRPKIKGEHPGLS
127 LSIGDVAKKLGEMWN
154 KAAKLKEKYEKDIAA
157 KLKEKYEKDIAAYRA
177 AAKKGVVKAEKSKKK
30 CREEHKKKHPDASVN
43 VNFSEFSKKCSERWK
50 KKCSERWKTMSAKEK
59 MSAKEKGKFEDMAKA
65 GKFEDMAKADKARYE
82 MKTYIPPKGETKKKF
88 PKGETKKKFKDPNAP
90 GETKKKFKDPNAPKR

Function

Multifunctional redox sensitive protein with various roles in different cellular compartments. In the nucleus is one of the major chromatin-associated non-histone proteins and acts as a DNA chaperone involved in replication, transcription, chromatin remodeling, V(D)J recombination, DNA repair and genome stability. Proposed to be an universal biosensor for nucleic acids. Promotes host inflammatory response to sterile and infectious signals and is involved in the coordination and integration of innate and adaptive immune responses. In the cytoplasm functions as a sensor and/or chaperone for immunogenic nucleic acids implicating the activation of TLR9-mediated immune responses, and mediates autophagy. Acts as a danger-associated molecular pattern (DAMP) molecule that amplifies immune responses during tissue injury. Released to the extracellular environment can bind DNA, nucleosomes, IL-1 beta, CXCL12, AGER isoform 2/sRAGE, lipopolysaccharide (LPS) and lipoteichoic acid (LTA), and activates cells through engagement of multiple surface receptors. In the extracellular compartment fully reduced HMGB1 (released by necrosis) acts as a chemokine, disulfide HMGB1 (actively secreted) as a cytokine, and sulfonyl HMGB1 (released from apoptotic cells) promotes immunological tolerance. Has proangiogenic activity. May be involved in platelet activation. Binds to phosphatidylserine and phosphatidylethanolamide. Bound to RAGE mediates signaling for neuronal outgrowth. May play a role in accumulation of expanded polyglutamine (polyQ) proteins (By similarity)

Protein Sequence

10 MGKGDPKKPR 20 GKMSSYAFFV 30 QTCREEHKKK 40 HPDASVNFSE 50 FSKKCSERWK 60 TMSAKEKGKF 70 EDMAKADKAR 80 YEREMKTYIP 90 PKGETKKKFK 100 DPNAPKRPPS 110 AFFLFCSEYR 120 PKIKGEHPGL 130 SIGDVAKKLG 140 EMWNNTAADD 150 KHPYEKKAAK 160 LKEKYEKDIA 170 AYRAKGKPDA 180 AKKGVVKAEK 190 SKKKKEEEED 200 EEDEEDEEEE 210 EDEEDEEEEE DDDDE

Gene Ontology

Classification GO ID Description
Cellular Component GO:0000785 chromatin
Cellular Component GO:0000793 condensed chromosome
Cellular Component GO:0005793 endoplasmic reticulum-Golgi intermediate compartment
Cellular Component GO:0005768 endosome
Cellular Component GO:0005576 extracellular region
Cellular Component GO:0005634 nucleus
Cellular Component GO:0005886 plasma membrane
Molecular Function GO:0000405 bubble DNA binding
Molecular Function GO:0000400 four-way junction DNA binding
Molecular Function GO:0044378 non-sequence-specific DNA binding, bending
Molecular Function GO:0097100 supercoiled DNA binding
Biological Process GO:0002250 adaptive immune response
Biological Process GO:0043277 apoptotic cell clearance
Biological Process GO:0006914 autophagy
Biological Process GO:0006935 chemotaxis
Biological Process GO:0006338 chromatin remodeling
Biological Process GO:0032392 DNA geometric change
Biological Process GO:0006310 DNA recombination
Biological Process GO:0006302 double-strand break repair
Biological Process GO:0006303 double-strand break repair via nonhomologous end joining
Biological Process GO:0006954 inflammatory response
Biological Process GO:0045087 innate immune response
Biological Process GO:0002755 MyD88-dependent toll-like receptor signaling pathway
Biological Process GO:0017055 negative regulation of RNA polymerase II transcription preinitiation complex assembly
Biological Process GO:0097350 neutrophil clearance
Biological Process GO:0006334 nucleosome assembly
Biological Process GO:1901224 positive regulation of non-canonical NF-kappaB signal transduction
Biological Process GO:0034165 positive regulation of toll-like receptor 9 signaling pathway
Biological Process GO:0002840 regulation of T cell mediated immune response to tumor cell
Biological Process GO:0034134 toll-like receptor 2 signaling pathway
Biological Process GO:0034142 toll-like receptor 4 signaling pathway

Reference

[1] Fan S, Zhou R, Wen H, Ye H, Ma S et al.. Global profiling of protein lactylome in porcine granulosa cells.. J Ovarian Res 18(1):177. 2025 Aug 8. PMID: 40781717.