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Overview

Uniprot IDQ05086
Protein NameUbiquitin-protein ligase E3A
Gene NameUBE3A
OrganismHomo sapiens

Kla Sites from experimental identification

Position Flanking peptide
123 KGARIDFKDVTYLTE
89 LCDPHPSKKGASSAY

Function

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates (PubMed:10373495, PubMed:16772533, PubMed:19204938, PubMed:19233847, PubMed:19325566, PubMed:19591933, PubMed:22645313, PubMed:24273172, PubMed:24728990, PubMed:30020076). Several substrates have been identified including the BMAL1, ARC, LAMTOR1, RAD23A and RAD23B, MCM7 (which is involved in DNA replication), annexin A1, the PML tumor suppressor, and the cell cycle regulator CDKN1B (PubMed:10373495, PubMed:19204938, PubMed:19325566, PubMed:19591933, PubMed:22645313, PubMed:24728990, PubMed:30020076). Additionally, may function as a cellular quality control ubiquitin ligase by helping the degradation of the cytoplasmic misfolded proteins (PubMed:19233847). Finally, UBE3A also promotes its own degradation in vivo. Plays an important role in the regulation of the circadian clock: involved in the ubiquitination of the core clock component BMAL1, leading to its proteasomal degradation (PubMed:24728990). Acts as transcriptional coactivator of progesterone receptor PGR upon progesterone hormone activation (PubMed:16772533). Acts as a regulator of synaptic development by mediating ubiquitination and degradation of ARC (By similarity). Required for synaptic remodeling in neurons by mediating ubiquitination and degradation of LAMTOR1, thereby limiting mTORC1 signaling and activity-dependent synaptic remodeling (By similarity). Synergizes with WBP2 in enhancing PGR activity (PubMed:16772533)

Protein Sequence

10 MEKLHQCYWK 20 SGEPQSDDIE 30 ASRMKRAAAK 40 HLIERYYHQL 50 TEGCGNEACT 60 NEFCASCPTF 70 LRMDNNAAAI 80 KALELYKINA 90 KLCDPHPSKK 100 GASSAYLENS 110 KGAPNNSCSE 120 IKMNKKGARI 130 DFKDVTYLTE 140 EKVYEILELC 150 REREDYSPLI 160 RVIGRVFSSA 170 EALVQSFRKV 180 KQHTKEELKS 190 LQAKDEDKDE 200 DEKEKAACSA 210 AAMEEDSEAS 220 SSRIGDSSQG 230 DNNLQKLGPD 240 DVSVDIDAIR 250 RVYTRLLSNE 260 KIETAFLNAL 270 VYLSPNVECD 280 LTYHNVYSRD 290 PNYLNLFIIV 300 MENRNLHSPE 310 YLEMALPLFC 320 KAMSKLPLAA 330 QGKLIRLWSK 340 YNADQIRRMM 350 ETFQQLITYK 360 VISNEFNSRN 370 LVNDDDAIVA 380 ASKCLKMVYY 390 ANVVGGEVDT 400 NHNEEDDEEP 410 IPESSELTLQ 420 ELLGEERRNK 430 KGPRVDPLET 440 ELGVKTLDCR 450 KPLIPFEEFI 460 NEPLNEVLEM 470 DKDYTFFKVE 480 TENKFSFMTC 490 PFILNAVTKN 500 LGLYYDNRIR 510 MYSERRITVL 520 YSLVQGQQLN 530 PYLRLKVRRD 540 HIIDDALVRL 550 EMIAMENPAD 560 LKKQLYVEFE 570 GEQGVDEGGV 580 SKEFFQLVVE 590 EIFNPDIGMF 600 TYDESTKLFW 610 FNPSSFETEG 620 QFTLIGIVLG 630 LAIYNNCILD 640 VHFPMVVYRK 650 LMGKKGTFRD 660 LGDSHPVLYQ 670 SLKDLLEYEG 680 NVEDDMMITF 690 QISQTDLFGN 700 PMMYDLKENG 710 DKIPITNENR 720 KEFVNLYSDY 730 ILNKSVEKQF 740 KAFRRGFHMV 750 TNESPLKYLF 760 RPEEIELLIC 770 GSRNLDFQAL 780 EETTEYDGGY 790 TRDSVLIREF 800 WEIVHSFTDE 810 QKRLFLQFTT 820 GTDRAPVGGL 830 GKLKMIIAKN 840 GPDTERLPTS 850 HTCFNVLLLP 860 EYSSKEKLKE 870 RLLKAITYAK GFGML

Gene Ontology

Classification GO ID Description
Cellular Component GO:0005829 cytosol
Cellular Component GO:0098978 glutamatergic synapse
Cellular Component GO:0005634 nucleus
Cellular Component GO:0099524 postsynaptic cytosol
Cellular Component GO:0000502 proteasome complex
Cellular Component GO:0008021 synaptic vesicle
Molecular Function GO:0003713 transcription coactivator activity
Molecular Function GO:0061630 ubiquitin protein ligase activity
Molecular Function GO:0004842 ubiquitin-protein transferase activity
Molecular Function GO:0008270 zinc ion binding
Biological Process GO:0007420 brain development
Biological Process GO:1904262 negative regulation of TORC1 signaling
Biological Process GO:1905528 positive regulation of Golgi lumen acidification
Biological Process GO:0031398 positive regulation of protein ubiquitination
Biological Process GO:0050847 progesterone receptor signaling pathway
Biological Process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
Biological Process GO:0051865 protein autoubiquitination
Biological Process GO:0070936 protein K48-linked ubiquitination
Biological Process GO:0000209 protein polyubiquitination
Biological Process GO:0006508 proteolysis
Biological Process GO:0042752 regulation of circadian rhythm
Biological Process GO:0048167 regulation of synaptic plasticity
Biological Process GO:2000058 regulation of ubiquitin-dependent protein catabolic process
Biological Process GO:0032570 response to progesterone
Biological Process GO:0048511 rhythmic process
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process

Reference

[1] Yang Z, Yan C, Ma J, Peng P, Ren X et al.. Lactylome analysis suggests lactylation-dependent mechanisms of metabolic adaptation in hepatocellular carcinoma.. Nat Metab 5(1):61-79. 2023 Jan. PMID: 36593272.