Search Results

Overview

Uniprot IDQ86U44
Protein NameN(6)-adenosine-methyltransferase catalytic subunit METTL3
Gene NameMETTL3
OrganismHomo sapiens

Kla Sites from experimental identification

Position Flanking peptide
241 TKEQQSKKVSQEILE
263 KEQSIVEKFRSRGRA
27 ERLQRRRKQDSGHLD

Function

The METTL3-METTL14 heterodimer forms a N6-methyltransferase complex that methylates adenosine residues at the N(6) position of some RNAs and regulates various processes such as the circadian clock, differentiation of embryonic and hematopoietic stem cells, cortical neurogenesis, response to DNA damage, differentiation of T-cells and primary miRNA processing (PubMed:22575960, PubMed:24284625, PubMed:25719671, PubMed:25799998, PubMed:26321680, PubMed:26593424, PubMed:27281194, PubMed:27373337, PubMed:27627798, PubMed:28297716, PubMed:29348140, PubMed:29506078, PubMed:30428350, PubMed:9409616). In the heterodimer formed with METTL14, METTL3 constitutes the catalytic core (PubMed:27281194, PubMed:27373337, PubMed:27627798). N6-methyladenosine (m6A), which takes place at the 5'-[AG]GAC-3' consensus sites of some mRNAs, plays a role in mRNA stability, processing, translation efficiency and editing (PubMed:22575960, PubMed:24284625, PubMed:25719671, PubMed:25799998, PubMed:26321680, PubMed:26593424, PubMed:28297716, PubMed:9409616). M6A acts as a key regulator of mRNA stability: methylation is completed upon the release of mRNA into the nucleoplasm and promotes mRNA destabilization and degradation (PubMed:28637692). In embryonic stem cells (ESCs), m6A methylation of mRNAs encoding key naive pluripotency-promoting transcripts results in transcript destabilization, promoting differentiation of ESCs (By similarity). M6A regulates the length of the circadian clock: acts as an early pace-setter in the circadian loop by putting mRNA production on a fast-track for facilitating nuclear processing, thereby providing an early point of control in setting the dynamics of the feedback loop (By similarity). M6A also regulates circadian regulation of hepatic lipid metabolism (PubMed:30428350). M6A regulates spermatogonial differentiation and meiosis and is essential for male fertility and spermatogenesis (By similarity). Also required for oogenesis (By similarity). Involved in the response to DNA damage: in response to ultraviolet irradiation, METTL3 rapidly catalyzes the formation of m6A on poly(A) transcripts at DNA damage sites, leading to the recruitment of POLK to DNA damage sites (PubMed:28297716). M6A is also required for T-cell homeostasis and differentiation: m6A methylation of transcripts of SOCS family members (SOCS1, SOCS3 and CISH) in naive T-cells promotes mRNA destabilization and degradation, promoting T-cell differentiation (By similarity). Inhibits the type I interferon response by mediating m6A methylation of IFNB (PubMed:30559377). M6A also takes place in other RNA molecules, such as primary miRNA (pri-miRNAs) (PubMed:25799998). Mediates m6A methylation of Xist RNA, thereby participating in random X inactivation: m6A methylation of Xist leads to target YTHDC1 reader on Xist and promote transcription repression activity of Xist (PubMed:27602518). M6A also regulates cortical neurogenesis: m6A methylation of transcripts related to transcription factors, neural stem cells, the cell cycle and neuronal differentiation during brain development promotes their destabilization and decay, promoting differentiation of radial glial cells (By similarity). METTL3 mediates methylation of pri-miRNAs, marking them for recognition and processing by DGCR8 (PubMed:25799998). Acts as a positive regulator of mRNA translation independently of the methyltransferase activity: promotes translation by interacting with the translation initiation machinery in the cytoplasm (PubMed:27117702). Its overexpression in a number of cancer cells suggests that it may participate in cancer cell proliferation by promoting mRNA translation (PubMed:27117702). During human coronavirus SARS-CoV-2 infection, adds m6A modifications in SARS-CoV-2 RNA leading to decreased RIGI binding and subsequently dampening the sensing and activation of innate immune responses (PubMed:33961823)

Protein Sequence

10 MSDTWSSIQA 20 HKKQLDSLRE 30 RLQRRRKQDS 40 GHLDLRNPEA 50 ALSPTFRSDS 60 PVPTAPTSGG 70 PKPSTASAVP 80 ELATDPELEK 90 KLLHHLSDLA 100 LTLPTDAVSI 110 CLAISTPDAP 120 ATQDGVESLL 130 QKFAAQELIE 140 VKRGLLQDDA 150 HPTLVTYADH 160 SKLSAMMGAV 170 AEKKGPGEVA 180 GTVTGQKRRA 190 EQDSTTVAAF 200 ASSLVSGLNS 210 SASEPAKEPA 220 KKSRKHAASD 230 VDLEIESLLN 240 QQSTKEQQSK 250 KVSQEILELL 260 NTTTAKEQSI 270 VEKFRSRGRA 280 QVQEFCDYGT 290 KEECMKASDA 300 DRPCRKLHFR 310 RIINKHTDES 320 LGDCSFLNTC 330 FHMDTCKYVH 340 YEIDACMDSE 350 APGSKDHTPS 360 QELALTQSVG 370 GDSSADRLFP 380 PQWICCDIRY 390 LDVSILGKFA 400 VVMADPPWDI 410 HMELPYGTLT 420 DDEMRRLNIP 430 VLQDDGFLFL 440 WVTGRAMELG 450 RECLNLWGYE 460 RVDEIIWVKT 470 NQLQRIIRTG 480 RTGHWLNHGK 490 EHCLVGVKGN 500 PQGFNQGLDC 510 DVIVAEVRST 520 SHKPDEIYGM 530 IERLSPGTRK 540 IELFGRPHNV 550 QPNWITLGNQ 560 LDGIHLLDPD 570 VVARFKQRYP 580 DGIISKPKNL

Gene Ontology

Classification GO ID Description
Cellular Component GO:0016607 nuclear speck
Cellular Component GO:0005829 cytosol
Cellular Component GO:0016604 nuclear body
Cellular Component GO:0005654 nucleoplasm
Cellular Component GO:0005634 nucleus
Cellular Component GO:0036396 RNA N6-methyladenosine methyltransferase complex
Molecular Function GO:0003729 mRNA binding
Molecular Function GO:0001734 mRNA m(6)A methyltransferase activity
Molecular Function GO:0046982 protein heterodimerization activity
Molecular Function GO:0008173 RNA methyltransferase activity
Molecular Function GO:1904047 S-adenosyl-L-methionine binding
Biological Process GO:0034644 cellular response to UV
Biological Process GO:0007623 circadian rhythm
Biological Process GO:0006974 DNA damage response
Biological Process GO:0009048 dosage compensation by inactivation of X chromosome
Biological Process GO:0098508 endothelial to hematopoietic transition
Biological Process GO:0021861 forebrain radial glial cell differentiation
Biological Process GO:0042063 gliogenesis
Biological Process GO:0045087 innate immune response
Biological Process GO:0061157 mRNA destabilization
Biological Process GO:0016556 mRNA modification
Biological Process GO:0006397 mRNA processing
Biological Process GO:0000398 mRNA splicing, via spliceosome
Biological Process GO:0045746 negative regulation of Notch signaling pathway
Biological Process GO:0060339 negative regulation of type I interferon-mediated signaling pathway
Biological Process GO:0048477 oogenesis
Biological Process GO:1903679 positive regulation of cap-independent translational initiation
Biological Process GO:0045727 positive regulation of translation
Biological Process GO:0031053 primary miRNA processing
Biological Process GO:1902036 regulation of hematopoietic stem cell differentiation
Biological Process GO:0051445 regulation of meiotic cell cycle
Biological Process GO:0045580 regulation of T cell differentiation
Biological Process GO:0001510 RNA methylation
Biological Process GO:0043489 RNA stabilization
Biological Process GO:0007283 spermatogenesis
Biological Process GO:0019827 stem cell population maintenance

Reference

[1] Yang Z, Yan C, Ma J, Peng P, Ren X et al.. Lactylome analysis suggests lactylation-dependent mechanisms of metabolic adaptation in hepatocellular carcinoma.. Nat Metab 5(1):61-79. 2023 Jan. PMID: 36593272.